skip to main content
US FlagAn official website of the United States government
dot gov icon
Official websites use .gov
A .gov website belongs to an official government organization in the United States.
https lock icon
Secure .gov websites use HTTPS
A lock ( lock ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.


Search for: All records

Creators/Authors contains: "Irby, Stefan M"

Note: When clicking on a Digital Object Identifier (DOI) number, you will be taken to an external site maintained by the publisher. Some full text articles may not yet be available without a charge during the embargo (administrative interval).
What is a DOI Number?

Some links on this page may take you to non-federal websites. Their policies may differ from this site.

  1. Campus shutdowns during the SARS-CoV2 pandemic posed unique challenges to faculty and students engaged in laboratory courses. Formerly hands-on experiments had to be quickly pivoted to emergency remote learning. While some resources existed prior to this period, many currently available online modules and/or simulations focus on a single technique. The Biochemistry Authentic Scientific Inquiry Lab (BASIL) curriculum has, for several years, provided a robust, linked, holistic inquiry experience that allows students to make connections between multiple techniques, both computational in nature as well as wet-lab based. As a Course-based Undergraduate Research Experience (CURE), this flexible, module-based curriculum allows students to generate original hypotheses based on analysis of proteins of unknown function. We have taught this curriculum as the upper-level laboratory course on our campuses and were obliged to transition to remote instruction at various points in the course sequence. We report on the experiences of faculty and students over the transition period in this course. Additionally, we report as a case study results of one of our campus’ ongoing discipline-based education research (DBER) on the BASIL curriculum prior to and during remote delivery. 
    more » « less
  2. Students at the Rochester Institute of Technology and Dowling College used bioinformatics software, which they had helped develop, to predict the function of protein structures whose functions had not been assigned or confirmed. Over the course of time, they incorporated other bioinformatics tools and moved the project to the wet lab, where they sought to confirm their in silico predictions with in vitro assays. In this process, we saw so much personal and professional growth among our students that we chose to implement their approach in an undergraduate biochemistry teaching lab, which we call BASIL, for Biochemistry Authentic Scientific Inquiry Lab. This curriculum has now been implemented by thirteen faculty members on eight campuses, and we look forward to a long-range exploration of BASIL’s impact on the students who enroll in courses that use the BASIL curriculum. 
    more » « less
  3. Students at the Rochester Institute of Technology and Dowling College used bioinformatics software, which they had helped develop, to predict the function of protein structures whose functions had not been assigned or confirmed. Over the course of time, they incorporated other bioinformatics tools and moved the project to the wet lab, where they sought to confirm their in silico predictions with in vitro assays. In this process, we saw so much personal and professional growth among our students that we chose to implement their approach in an undergraduate biochemistry teaching lab, which we call BASIL, for Biochemistry Authentic Scientific Inquiry Lab. This curriculum has now been implemented by thirteen faculty members on eight campuses, and we look forward to a long-range exploration of BASIL’s impact on the students who enroll in courses that use the BASIL curriculum. 
    more » « less